PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0102s0161.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 201aa    MW: 23032.2 Da    PI: 4.9542
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0102s0161.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.3e-31137195159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYG+K+vk+s++pr+YY+C+ ++Cpvkk+ver++edp++v++tYeg H+h 
  Kaladp0102s0161.1.p 137 LDDGYKWRKYGKKMVKNSPNPRNYYKCSVEKCPVKKRVERDREDPRYVITTYEGVHTHM 195
                          59********************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-33123197IPR003657WRKY domain
SuperFamilySSF1182905.49E-28130197IPR003657WRKY domain
PROSITE profilePS5081130.446132197IPR003657WRKY domain
SMARTSM007743.1E-35137196IPR003657WRKY domain
PfamPF031063.6E-24138194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGVLYIHTHI YIYVRASVEP FDQGMDGNSG DYQYQSMYNS FGYLDFGEAS HANFGNNDFL  60
PDYLLDDWFN QSDEPAVTGV ELGQRDPVYQ MSEVNGVDGN YYAQNEETDT RESGSSTGRA  120
QGKEKFAFKT KSEIDTLDDG YKWRKYGKKM VKNSPNPRNY YKCSVEKCPV KKRVERDRED  180
PRYVITTYEG VHTHMSPSGY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-24127198778Probable WRKY transcription factor 4
2lex_A1e-24127198778Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445519.13e-49PREDICTED: probable WRKY transcription factor 50
RefseqXP_015884439.17e-49PREDICTED: probable WRKY transcription factor 50
SwissprotQ8VWQ55e-40WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A0A0KD408e-49A0A0A0KD40_CUCSA; Uncharacterized protein
STRINGVIT_04s0008g01470.t011e-47(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.13e-41WRKY DNA-binding protein 50